#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01676/HG01676.cram --algo AlignmentStat 1000G/HG01676/QCmetrics/HG01676.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368491892	368491892	1.000000	0	368403595	0.999760	54689867477	348746691	51967250005	51104901706	0.000000	0.003875	0.003333	0.000226	150.000000	367615699	0.997861	0	0.500526	0.006569	0.000000	
SECOND_OF_PAIR	368491892	368491892	1.000000	0	367680665	0.997799	54441638790	345698809	51550811108	50770013511	0.000000	0.003743	0.003106	0.000235	150.000000	367615699	0.999823	0	0.501082	0.006645	0.000000	
PAIR	736983784	736983784	1.000000	0	736084260	0.998779	109131506267	694445500	103518061113	101874915217	0.000000	0.003809	0.003220	0.000231	150.000000	735231398	0.998841	0	0.500804	0.006607	0.000000