#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01678/HG01678.cram --algo AlignmentStat 1000G/HG01678/QCmetrics/HG01678.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	338021918	338021918	1.000000	0	337937159	0.999749	50131915634	317725741	47334505953	46540099001	0.000000	0.004102	0.003414	0.000232	150.000000	337170588	0.997732	0	0.500395	0.006656	0.000000	
SECOND_OF_PAIR	338021918	338021918	1.000000	0	337232895	0.997666	49889292605	314696049	46923375928	46214509953	0.000000	0.003933	0.003144	0.000241	150.000000	337170588	0.999815	0	0.501249	0.006723	0.000000	
PAIR	676043836	676043836	1.000000	0	675170054	0.998708	100021208239	632421790	94257881881	92754608954	0.000000	0.004018	0.003280	0.000236	150.000000	674341176	0.998772	0	0.500821	0.006690	0.000000