#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01680/HG01680.cram --algo AlignmentStat 1000G/HG01680/QCmetrics/HG01680.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	351499055	351499055	1.000000	0	351408755	0.999743	52113830586	330247373	49197296452	48364663366	0.000000	0.004171	0.003432	0.000236	150.000000	350486155	0.997375	0	0.500400	0.007631	0.000000	
SECOND_OF_PAIR	351499055	351499055	1.000000	0	350549791	0.997299	51810715098	326924278	48719802127	47862256417	0.000000	0.004302	0.003455	0.000245	150.000000	350486155	0.999818	0	0.501564	0.007786	0.000000	
PAIR	702998110	702998110	1.000000	0	701958546	0.998521	103924545684	657171651	97917098579	96226919783	0.000000	0.004236	0.003443	0.000241	150.000000	700972310	0.998595	0	0.500981	0.007708	0.000000