#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01682/HG01682.cram --algo AlignmentStat 1000G/HG01682/QCmetrics/HG01682.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	366087980	366087980	1.000000	0	365994072	0.999743	54302814767	343966507	51248699500	50394507302	0.000000	0.004056	0.003399	0.000228	150.000000	365299716	0.998103	0	0.500374	0.006788	0.000000	
SECOND_OF_PAIR	366087980	366087980	1.000000	0	365365384	0.998026	54103928392	341655832	50933408528	50082787091	0.000000	0.004058	0.003331	0.000234	150.000000	365299716	0.999820	0	0.500869	0.006870	0.000000	
PAIR	732175960	732175960	1.000000	0	731359456	0.998885	108406743159	685622339	102182108028	100477294393	0.000000	0.004057	0.003365	0.000231	150.000000	730599432	0.998961	0	0.500622	0.006829	0.000000