#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01704/HG01704.cram --algo AlignmentStat 1000G/HG01704/QCmetrics/HG01704.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369066741	369066741	1.000000	0	368974245	0.999749	54807156998	348372515	51917813472	51028687320	0.000000	0.003935	0.003410	0.000216	150.000000	368169028	0.997818	0	0.500510	0.006158	0.000000	
SECOND_OF_PAIR	369066741	369066741	1.000000	0	368234655	0.997745	54562286340	345488797	51523907058	50694205375	0.000000	0.003823	0.003212	0.000224	150.000000	368169028	0.999822	0	0.501012	0.006226	0.000000	
PAIR	738133482	738133482	1.000000	0	737208900	0.998747	109369443338	693861312	103441720530	101722892695	0.000000	0.003879	0.003312	0.000220	150.000000	736338056	0.998819	0	0.500761	0.006192	0.000000