#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01708/HG01708.cram --algo AlignmentStat 1000G/HG01708/QCmetrics/HG01708.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	364454302	364454302	1.000000	0	364348155	0.999709	54064352979	343135485	51117444047	50204178682	0.000000	0.004282	0.003643	0.000226	150.000000	363522092	0.997733	0	0.500414	0.007749	0.000000	
SECOND_OF_PAIR	364454302	364454302	1.000000	0	363588869	0.997625	53789779571	340153520	50684219290	49830489171	0.000000	0.004233	0.003499	0.000234	150.000000	363522092	0.999816	0	0.501219	0.007973	0.000000	
PAIR	728908604	728908604	1.000000	0	727937024	0.998667	107854132550	683289005	101801663337	100034667853	0.000000	0.004257	0.003571	0.000230	150.000000	727044184	0.998773	0	0.500816	0.007861	0.000000