#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01709/HG01709.cram --algo AlignmentStat 1000G/HG01709/QCmetrics/HG01709.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	370665296	370665296	1.000000	0	370514700	0.999594	54993242071	348743673	51952978928	51030276924	0.000000	0.004255	0.003687	0.000223	150.000000	369550327	0.997397	0	0.500538	0.007299	0.000000	
SECOND_OF_PAIR	370665296	370665296	1.000000	0	369624221	0.997191	54676210952	345247336	51446421758	50537112575	0.000000	0.004299	0.003614	0.000232	150.000000	369550327	0.999800	0	0.501442	0.007397	0.000000	
PAIR	741330592	741330592	1.000000	0	740138921	0.998393	109669453023	693991009	103399400686	101567389499	0.000000	0.004277	0.003651	0.000228	150.000000	739100654	0.998597	0	0.500989	0.007348	0.000000