#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01757/HG01757.cram --algo AlignmentStat 1000G/HG01757/QCmetrics/HG01757.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	378550352	378550352	1.000000	0	378448974	0.999732	56181266107	357134241	53221587032	52252907648	0.000000	0.004178	0.003590	0.000223	150.000000	377525269	0.997559	0	0.500510	0.006363	0.000000	
SECOND_OF_PAIR	378550352	378550352	1.000000	0	377590398	0.997464	55867535168	353756730	52722041882	51779283607	0.000000	0.004270	0.003575	0.000231	150.000000	377525269	0.999828	0	0.501407	0.006480	0.000000	
PAIR	757100704	757100704	1.000000	0	756039372	0.998598	112048801275	710890971	105943628914	104032191255	0.000000	0.004224	0.003583	0.000227	150.000000	755050538	0.998692	0	0.500958	0.006422	0.000000