#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01761/HG01761.cram --algo AlignmentStat 1000G/HG01761/QCmetrics/HG01761.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368400758	368400758	1.000000	0	368266991	0.999637	54660426812	346982994	51698863134	50751233667	0.000000	0.004233	0.003626	0.000223	150.000000	367305118	0.997388	0	0.500560	0.006161	0.000000	
SECOND_OF_PAIR	368400758	368400758	1.000000	0	367373486	0.997212	54357366507	343890796	51231082137	50150151008	0.000000	0.004698	0.003984	0.000229	150.000000	367305118	0.999814	0	0.501436	0.006196	0.000000	
PAIR	736801516	736801516	1.000000	0	735640477	0.998424	109017793319	690873790	102929945271	100901384675	0.000000	0.004465	0.003804	0.000226	150.000000	734610236	0.998600	0	0.500998	0.006179	0.000000