#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01762/HG01762.cram --algo AlignmentStat 1000G/HG01762/QCmetrics/HG01762.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	378694680	378694680	1.000000	0	378549943	0.999618	56188350625	356620383	53140704202	52178969341	0.000000	0.004187	0.003602	0.000223	150.000000	377476591	0.997165	0	0.500593	0.006228	0.000000	
SECOND_OF_PAIR	378694680	378694680	1.000000	0	377552339	0.996983	55822945099	352684495	52565684299	51620784150	0.000000	0.004283	0.003575	0.000233	150.000000	377476591	0.999799	0	0.501637	0.006308	0.000000	
PAIR	757389360	757389360	1.000000	0	756102282	0.998301	112011295724	709304878	105706388501	103799753491	0.000000	0.004235	0.003589	0.000228	150.000000	754953182	0.998480	0	0.501114	0.006268	0.000000