#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01779/HG01779.cram --algo AlignmentStat 1000G/HG01779/QCmetrics/HG01779.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	401311598	401311598	1.000000	0	401231475	0.999800	59708962574	379206794	56611518162	55798437994	0.000000	0.003437	0.002936	0.000223	150.000000	399937375	0.996775	0	0.500418	0.005701	0.000000	
SECOND_OF_PAIR	401311598	401311598	1.000000	0	399981620	0.996686	59152284833	375584247	55911741745	54824400794	0.000000	0.004208	0.003619	0.000227	150.000000	399937375	0.999889	0	0.501214	0.005952	0.000000	
PAIR	802623196	802623196	1.000000	0	801213095	0.998243	118861247407	754791041	112523259907	110622838788	0.000000	0.003820	0.003275	0.000225	150.000000	799874750	0.998330	0	0.500815	0.005826	0.000000