#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01784/HG01784.cram --algo AlignmentStat 1000G/HG01784/QCmetrics/HG01784.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	363385289	363385289	1.000000	0	363307054	0.999785	54028050029	343383107	51243806689	50479345717	0.000000	0.003665	0.003122	0.000225	150.000000	362499685	0.997778	0	0.500613	0.005729	0.000000	
SECOND_OF_PAIR	363385289	363385289	1.000000	0	362545884	0.997690	53669984326	340425042	50744332157	49781653064	0.000000	0.004289	0.003655	0.000230	150.000000	362499685	0.999873	0	0.500848	0.005876	0.000000	
PAIR	726770578	726770578	1.000000	0	725852938	0.998737	107698034355	683808149	101988138846	100260998781	0.000000	0.003976	0.003387	0.000227	150.000000	724999370	0.998824	0	0.500731	0.005802	0.000000