#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01795/HG01795.cram --algo AlignmentStat 1000G/HG01795/QCmetrics/HG01795.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	455841512	455841512	1.000000	0	455738883	0.999775	67789034640	429733539	64152798793	63410248848	0.000000	0.003300	0.002745	0.000237	150.000000	454401506	0.997065	0	0.500542	0.005875	0.000000	
SECOND_OF_PAIR	455841512	455841512	1.000000	0	454448921	0.996945	67126956906	425469855	63311974896	62226196812	0.000000	0.005354	0.004707	0.000241	150.000000	454401506	0.999896	0	0.501051	0.006282	0.000000	
PAIR	911683024	911683024	1.000000	0	910187804	0.998360	134915991546	855203394	127464773689	125636445660	0.000000	0.004322	0.003719	0.000239	150.000000	908803012	0.998479	0	0.500796	0.006078	0.000000