#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01800/HG01800.cram --algo AlignmentStat 1000G/HG01800/QCmetrics/HG01800.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	378990204	378990204	1.000000	0	378843983	0.999614	56246389233	357970525	53339830428	52382418842	0.000000	0.004134	0.003602	0.000222	150.000000	377980065	0.997720	0	0.500587	0.006271	0.000000	
SECOND_OF_PAIR	378990204	378990204	1.000000	0	378055309	0.997533	55959779264	354690042	52873900788	52004927022	0.000000	0.004002	0.003366	0.000231	150.000000	377980065	0.999801	0	0.501142	0.006367	0.000000	
PAIR	757980408	757980408	1.000000	0	756899292	0.998574	112206168497	712660567	106213731216	104387345864	0.000000	0.004068	0.003485	0.000226	150.000000	755960130	0.998759	0	0.500864	0.006319	0.000000