#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01804/HG01804.cram --algo AlignmentStat 1000G/HG01804/QCmetrics/HG01804.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	359274585	359274585	1.000000	0	359106232	0.999531	53294648662	339399063	50570957115	49689966144	0.000000	0.004113	0.003551	0.000227	150.000000	358156478	0.997355	0	0.500603	0.006469	0.000000	
SECOND_OF_PAIR	359274585	359274585	1.000000	0	358230176	0.997093	52984557469	336136770	50087065757	49155763352	0.000000	0.004325	0.003654	0.000235	150.000000	358156478	0.999794	0	0.501458	0.006594	0.000000	
PAIR	718549170	718549170	1.000000	0	717336408	0.998312	106279206131	675535833	100658022872	98845729496	0.000000	0.004219	0.003603	0.000231	150.000000	716312956	0.998573	0	0.501030	0.006531	0.000000