#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01806/HG01806.cram --algo AlignmentStat 1000G/HG01806/QCmetrics/HG01806.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380704943	380704943	1.000000	0	380576734	0.999663	56505198112	359766893	53615990027	52706881670	0.000000	0.004108	0.003561	0.000226	150.000000	376523131	0.989349	0	0.500478	0.019628	0.000000	
SECOND_OF_PAIR	380704943	380704943	1.000000	0	376607970	0.989238	54907357803	346028404	51507715978	50641022380	0.000000	0.004368	0.003596	0.000256	150.000000	376523131	0.999775	0	0.501930	0.020096	0.000000	
PAIR	761409886	761409886	1.000000	0	757184704	0.994451	111412555915	705795297	105123706005	103347904050	0.000000	0.004236	0.003578	0.000241	150.000000	753046262	0.994534	0	0.501200	0.019861	0.000000