#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01808/HG01808.cram --algo AlignmentStat 1000G/HG01808/QCmetrics/HG01808.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	383142110	383142110	1.000000	0	383002975	0.999637	56880775970	363647008	54183968246	53230483706	0.000000	0.003995	0.003543	0.000216	150.000000	382293168	0.998147	0	0.500571	0.006820	0.000000	
SECOND_OF_PAIR	383142110	383142110	1.000000	0	382370452	0.997986	56670576955	361153227	53841309333	53014056671	0.000000	0.003756	0.003230	0.000224	150.000000	382293168	0.999798	0	0.500658	0.007045	0.000000	
PAIR	766284220	766284220	1.000000	0	765373427	0.998811	113551352925	724800235	108025277579	106244540377	0.000000	0.003876	0.003387	0.000220	150.000000	764586336	0.998972	0	0.500615	0.006932	0.000000