#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01810/HG01810.cram --algo AlignmentStat 1000G/HG01810/QCmetrics/HG01810.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	349904145	349904145	1.000000	0	349784482	0.999658	51897043362	328871971	48984652741	47897112318	0.000000	0.004914	0.004283	0.000226	150.000000	348872780	0.997394	0	0.500574	0.006261	0.000000	
SECOND_OF_PAIR	349904145	349904145	1.000000	0	348944317	0.997257	51605399799	325748728	48533073550	47548595868	0.000000	0.004714	0.003982	0.000235	150.000000	348872780	0.999795	0	0.501152	0.006360	0.000000	
PAIR	699808290	699808290	1.000000	0	698728799	0.998457	103502443161	654620699	97517726291	95445708186	0.000000	0.004814	0.004133	0.000230	150.000000	697745560	0.998593	0	0.500863	0.006311	0.000000