#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01816/HG01816.cram --algo AlignmentStat 1000G/HG01816/QCmetrics/HG01816.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	394453993	394453993	1.000000	0	394357715	0.999756	58594378127	370411696	55234992200	54397976459	0.000000	0.003895	0.003231	0.000232	150.000000	393482039	0.997779	0	0.500490	0.006050	0.000000	
SECOND_OF_PAIR	394453993	394453993	1.000000	0	393542447	0.997689	58279870309	367035299	54742105452	53926820218	0.000000	0.003910	0.003154	0.000240	150.000000	393482039	0.999847	0	0.501071	0.006084	0.000000	
PAIR	788907986	788907986	1.000000	0	787900162	0.998723	116874248436	737446995	109977097652	108324796677	0.000000	0.003903	0.003193	0.000236	150.000000	786964078	0.998812	0	0.500780	0.006067	0.000000