#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01840/HG01840.cram --algo AlignmentStat 1000G/HG01840/QCmetrics/HG01840.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379361098	379361098	1.000000	0	379252926	0.999715	56255283933	355994330	53030714528	52065435333	0.000000	0.004471	0.003737	0.000234	150.000000	378386870	0.997716	0	0.500363	0.007524	0.000000	
SECOND_OF_PAIR	379361098	379361098	1.000000	0	378455625	0.997613	55977636196	353046783	52604385984	51679496456	0.000000	0.004452	0.003630	0.000241	150.000000	378386870	0.999818	0	0.501089	0.007672	0.000000	
PAIR	758722196	758722196	1.000000	0	757708551	0.998664	112232920129	709041113	105635100512	103744931789	0.000000	0.004462	0.003684	0.000238	150.000000	756773740	0.998766	0	0.500725	0.007598	0.000000