#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01842/HG01842.cram --algo AlignmentStat 1000G/HG01842/QCmetrics/HG01842.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	373855332	373855332	1.000000	0	373740254	0.999692	55404368426	350583425	52221005032	51272498771	0.000000	0.004431	0.003670	0.000241	150.000000	372739619	0.997323	0	0.500520	0.007045	0.000000	
SECOND_OF_PAIR	373855332	373855332	1.000000	0	372810032	0.997204	55051136099	346650699	51651314765	50780815416	0.000000	0.004373	0.003493	0.000251	150.000000	372739619	0.999811	0	0.501513	0.007124	0.000000	
PAIR	747710664	747710664	1.000000	0	746550286	0.998448	110455504525	697234124	103872319797	102053314187	0.000000	0.004402	0.003582	0.000246	150.000000	745479238	0.998565	0	0.501016	0.007084	0.000000