#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01844/HG01844.cram --algo AlignmentStat 1000G/HG01844/QCmetrics/HG01844.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	364120188	364120188	1.000000	0	364014959	0.999711	54038274099	343166186	51133151211	50176872284	0.000000	0.004237	0.003647	0.000227	150.000000	363076550	0.997422	0	0.500484	0.006628	0.000000	
SECOND_OF_PAIR	364120188	364120188	1.000000	0	363139996	0.997308	53738243872	340182786	50682675993	49615375447	0.000000	0.004636	0.003944	0.000234	150.000000	363076550	0.999825	0	0.501348	0.006710	0.000000	
PAIR	728240376	728240376	1.000000	0	727154955	0.998510	107776517971	683348972	101815827204	99792247731	0.000000	0.004436	0.003795	0.000230	150.000000	726153100	0.998622	0	0.500915	0.006669	0.000000