#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01845/HG01845.cram --algo AlignmentStat 1000G/HG01845/QCmetrics/HG01845.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	372329308	372329308	1.000000	0	372215829	0.999695	55258721162	352280253	52489572258	51513781398	0.000000	0.004164	0.003633	0.000224	150.000000	371241306	0.997382	0	0.500519	0.006133	0.000000	
SECOND_OF_PAIR	372329308	372329308	1.000000	0	371310312	0.997263	54948098878	348836895	51991632371	51018891504	0.000000	0.004289	0.003645	0.000233	150.000000	371241306	0.999814	0	0.501579	0.006232	0.000000	
PAIR	744658616	744658616	1.000000	0	743526141	0.998479	110206820040	701117148	104481204629	102532672902	0.000000	0.004226	0.003639	0.000229	150.000000	742482612	0.998597	0	0.501048	0.006182	0.000000