#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01852/HG01852.cram --algo AlignmentStat 1000G/HG01852/QCmetrics/HG01852.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385718430	385718430	1.000000	0	385625357	0.999759	57280759656	362104243	53988506372	53134923967	0.000000	0.003986	0.003342	0.000238	150.000000	384836520	0.997954	0	0.500530	0.006616	0.000000	
SECOND_OF_PAIR	385718430	385718430	1.000000	0	384895932	0.997868	56994715652	359233597	53565510104	52739037095	0.000000	0.003985	0.003263	0.000244	150.000000	384836520	0.999846	0	0.500636	0.006723	0.000000	
PAIR	771436860	771436860	1.000000	0	770521289	0.998813	114275475308	721337840	107554016476	105873961062	0.000000	0.003985	0.003302	0.000241	150.000000	769673040	0.998899	0	0.500583	0.006669	0.000000