#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01863/HG01863.cram --algo AlignmentStat 1000G/HG01863/QCmetrics/HG01863.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382568226	382568226	1.000000	0	382451826	0.999696	56795172481	362267199	53984785295	53042377349	0.000000	0.004011	0.003512	0.000219	150.000000	381545663	0.997631	0	0.500519	0.006616	0.000000	
SECOND_OF_PAIR	382568226	382568226	1.000000	0	381617649	0.997515	56487056115	358894950	53497855227	52603072104	0.000000	0.003985	0.003387	0.000228	150.000000	381545663	0.999811	0	0.501211	0.006769	0.000000	
PAIR	765136452	765136452	1.000000	0	764069475	0.998606	113282228596	721162149	107482640522	105645449453	0.000000	0.003998	0.003450	0.000224	150.000000	763091326	0.998720	0	0.500864	0.006692	0.000000