#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01868/HG01868.cram --algo AlignmentStat 1000G/HG01868/QCmetrics/HG01868.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	377725115	377725115	1.000000	0	377625041	0.999735	56091841834	356981393	53203073170	52236216575	0.000000	0.004072	0.003560	0.000219	150.000000	376562883	0.997187	0	0.500558	0.005641	0.000001	
SECOND_OF_PAIR	377725115	377725115	1.000000	0	376627467	0.997094	55741753208	353443064	52665435528	51571886177	0.000000	0.004540	0.003911	0.000227	150.000000	376562883	0.999829	0	0.501669	0.005711	0.000000	
PAIR	755450230	755450230	1.000000	0	754252508	0.998415	111833595042	710424457	105868508698	103808102752	0.000000	0.004305	0.003735	0.000223	150.000000	753125766	0.998506	0	0.501113	0.005676	0.000000