#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01870/HG01870.cram --algo AlignmentStat 1000G/HG01870/QCmetrics/HG01870.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	363576047	363576047	1.000000	0	363475173	0.999723	53960206180	343255587	51155864394	50241768239	0.000000	0.004106	0.003541	0.000230	150.000000	362607150	0.997612	0	0.500612	0.006499	0.000000	
SECOND_OF_PAIR	363576047	363576047	1.000000	0	362671074	0.997511	53663080543	340113400	50696114309	49819450018	0.000000	0.004101	0.003444	0.000238	150.000000	362607150	0.999824	0	0.501043	0.006636	0.000000	
PAIR	727152094	727152094	1.000000	0	726146247	0.998617	107623286723	683368987	101851978703	100061218257	0.000000	0.004103	0.003492	0.000234	150.000000	725214300	0.998717	0	0.500827	0.006567	0.000000