#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01871/HG01871.cram --algo AlignmentStat 1000G/HG01871/QCmetrics/HG01871.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	381962661	381962661	1.000000	0	381825686	0.999641	56669259891	360206507	53665810579	52680881845	0.000000	0.004198	0.003653	0.000228	150.000000	380851420	0.997448	0	0.500652	0.007016	0.000000	
SECOND_OF_PAIR	381962661	381962661	1.000000	0	380925875	0.997286	56357698932	356944451	53189993068	52215574490	0.000000	0.004304	0.003658	0.000236	150.000000	380851420	0.999805	0	0.501133	0.007166	0.000000	
PAIR	763925322	763925322	1.000000	0	762751561	0.998464	113026958823	717150958	106855803647	104896456335	0.000000	0.004251	0.003656	0.000232	150.000000	761702840	0.998625	0	0.500892	0.007091	0.000000