#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01878/HG01878.cram --algo AlignmentStat 1000G/HG01878/QCmetrics/HG01878.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	391329775	391329775	1.000000	0	391207431	0.999687	58139603022	369960202	55170580446	54341993160	0.000000	0.003732	0.003196	0.000228	150.000000	390361462	0.997838	0	0.500462	0.006069	0.000000	
SECOND_OF_PAIR	391329775	391329775	1.000000	0	390422848	0.997682	57836044163	366816434	54704281255	53854410450	0.000000	0.003835	0.003208	0.000236	150.000000	390361462	0.999843	0	0.501087	0.006165	0.000000	
PAIR	782659550	782659550	1.000000	0	781630279	0.998685	115975647185	736776636	109874861701	108196403610	0.000000	0.003784	0.003202	0.000232	150.000000	780722924	0.998839	0	0.500774	0.006117	0.000000