#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01879/HG01879.cram --algo AlignmentStat 1000G/HG01879/QCmetrics/HG01879.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376311516	376311516	1.000000	0	376222316	0.999763	55859388086	353436676	52688152963	51909309972	0.000000	0.004030	0.003344	0.000256	150.000000	375353631	0.997691	0	0.500491	0.007092	0.000000	
SECOND_OF_PAIR	376311516	376311516	1.000000	0	375415416	0.997619	55522816367	350466140	52205925425	51218148281	0.000000	0.004593	0.003810	0.000262	150.000000	375353631	0.999835	0	0.501240	0.007249	0.000000	
PAIR	752623032	752623032	1.000000	0	751637732	0.998691	111382204453	703902816	104894078388	103127458253	0.000000	0.004311	0.003576	0.000259	150.000000	750707262	0.998762	0	0.500865	0.007170	0.000000