#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01880/HG01880.cram --algo AlignmentStat 1000G/HG01880/QCmetrics/HG01880.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	347758424	347758424	1.000000	0	347681786	0.999780	51663056786	328393424	48973107760	48255857110	0.000000	0.003778	0.003220	0.000244	150.000000	346921930	0.997815	0	0.500577	0.006397	0.000000	
SECOND_OF_PAIR	347758424	347758424	1.000000	0	346976219	0.997751	51365665036	325570436	48530750905	47740547531	0.000000	0.004036	0.003385	0.000251	150.000000	346921930	0.999844	0	0.501085	0.006552	0.000000	
PAIR	695516848	695516848	1.000000	0	694658005	0.998765	103028721822	653963860	97503858665	95996404641	0.000000	0.003906	0.003302	0.000248	150.000000	693843860	0.998828	0	0.500830	0.006475	0.000000