#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01882/HG01882.cram --algo AlignmentStat 1000G/HG01882/QCmetrics/HG01882.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	374184996	374184996	1.000000	0	374088176	0.999741	55530307893	351178495	52352878790	51506213265	0.000000	0.004175	0.003459	0.000265	150.000000	373248748	0.997756	0	0.500528	0.006815	0.000000	
SECOND_OF_PAIR	374184996	374184996	1.000000	0	373308357	0.997657	55228189648	348127533	51895863981	51033497949	0.000000	0.004287	0.003482	0.000272	150.000000	373248748	0.999840	0	0.500998	0.006944	0.000000	
PAIR	748369992	748369992	1.000000	0	747396533	0.998699	110758497541	699306028	104248742771	102539711214	0.000000	0.004231	0.003470	0.000269	150.000000	746497496	0.998797	0	0.500763	0.006880	0.000000