#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01892/HG01892.cram --algo AlignmentStat 1000G/HG01892/QCmetrics/HG01892.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	365873659	365873659	1.000000	0	365776977	0.999736	54326609122	343570183	51224227978	50409606357	0.000000	0.003982	0.003310	0.000236	150.000000	364918575	0.997653	0	0.500604	0.006725	0.000000	
SECOND_OF_PAIR	365873659	365873659	1.000000	0	364976256	0.997547	54003564581	340255548	50728407379	49908277010	0.000000	0.004098	0.003323	0.000244	150.000000	364918575	0.999842	0	0.501093	0.006841	0.000000	
PAIR	731747318	731747318	1.000000	0	730753233	0.998641	108330173703	683825731	101952635357	100317883367	0.000000	0.004040	0.003316	0.000240	150.000000	729837150	0.998746	0	0.500848	0.006783	0.000000