#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01893/HG01893.cram --algo AlignmentStat 1000G/HG01893/QCmetrics/HG01893.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	343456870	343456870	1.000000	0	343396569	0.999824	51064145635	323976318	48353548852	47764317259	0.000000	0.003393	0.002804	0.000240	150.000000	342388020	0.997063	0	0.500483	0.005991	0.000000	
SECOND_OF_PAIR	343456870	343456870	1.000000	0	342424384	0.996994	50650897466	320772250	47791897441	46847192660	0.000000	0.004401	0.003714	0.000246	150.000000	342388020	0.999894	0	0.501421	0.006188	0.000000	
PAIR	686913740	686913740	1.000000	0	685820953	0.998409	101715043101	644748568	96145446293	94611509919	0.000000	0.003895	0.003256	0.000243	150.000000	684776040	0.998476	0	0.500951	0.006089	0.000000