#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01894/HG01894.cram --algo AlignmentStat 1000G/HG01894/QCmetrics/HG01894.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	479070893	479070893	1.000000	0	478954448	0.999757	71195771320	451680461	67386003591	66406446386	0.000000	0.003903	0.003321	0.000260	150.000000	477704185	0.997390	0	0.500634	0.007160	0.000000	
SECOND_OF_PAIR	479070893	479070893	1.000000	0	477765106	0.997274	70708355383	447519006	66692866500	65393098929	0.000000	0.004652	0.003966	0.000265	150.000000	477704185	0.999872	0	0.501300	0.007347	0.000000	
PAIR	958141786	958141786	1.000000	0	956719554	0.998516	141904126703	899199467	134078870091	131799545315	0.000000	0.004276	0.003642	0.000262	150.000000	955408370	0.998630	0	0.500967	0.007254	0.000000