#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01933/HG01933.cram --algo AlignmentStat 1000G/HG01933/QCmetrics/HG01933.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379072676	379072676	1.000000	0	378957682	0.999697	56303526663	357693221	53336852056	52519048608	0.000000	0.003800	0.003232	0.000235	150.000000	378097041	0.997729	0	0.500549	0.007050	0.000000	
SECOND_OF_PAIR	379072676	379072676	1.000000	0	378157590	0.997586	55976462410	354208785	52821148601	52042453384	0.000000	0.003787	0.003119	0.000244	150.000000	378097041	0.999840	0	0.501156	0.007239	0.000000	
PAIR	758145352	758145352	1.000000	0	757115272	0.998641	112279989073	711902006	106158000657	104561501992	0.000000	0.003793	0.003176	0.000240	150.000000	756194082	0.998783	0	0.500852	0.007145	0.000000