#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01936/HG01936.cram --algo AlignmentStat 1000G/HG01936/QCmetrics/HG01936.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	363844037	363844037	1.000000	0	363757913	0.999763	54016242836	342048124	50997841991	50176231217	0.000000	0.003895	0.003272	0.000238	150.000000	363073794	0.998119	0	0.500488	0.006314	0.000000	
SECOND_OF_PAIR	363844037	363844037	1.000000	0	363128995	0.998035	53787673758	339698565	50652176202	49798986338	0.000000	0.004025	0.003328	0.000244	150.000000	363073794	0.999848	0	0.500824	0.006418	0.000000	
PAIR	727688074	727688074	1.000000	0	726886908	0.998899	107803916594	681746689	101650018193	99975217555	0.000000	0.003960	0.003300	0.000241	150.000000	726147588	0.998983	0	0.500656	0.006366	0.000000