#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01941/HG01941.cram --algo AlignmentStat 1000G/HG01941/QCmetrics/HG01941.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	397328654	397328654	1.000000	0	397191868	0.999656	59022088454	374465503	55835483849	54930523271	0.000000	0.003849	0.003258	0.000227	150.000000	396064451	0.997162	0	0.500543	0.006279	0.000000	
SECOND_OF_PAIR	397328654	397328654	1.000000	0	396133504	0.996992	58613181110	370250666	55199232252	54217545918	0.000000	0.004143	0.003429	0.000237	150.000000	396064451	0.999826	0	0.501669	0.006405	0.000000	
PAIR	794657308	794657308	1.000000	0	793325372	0.998324	117635269564	744716169	111034716101	109148069189	0.000000	0.003996	0.003343	0.000232	150.000000	792128902	0.998492	0	0.501105	0.006342	0.000000