#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01944/HG01944.cram --algo AlignmentStat 1000G/HG01944/QCmetrics/HG01944.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	390410782	390410782	1.000000	0	390310081	0.999742	57975432567	366554481	54650708170	53781422144	0.000000	0.003969	0.003300	0.000235	150.000000	389438602	0.997767	0	0.500613	0.006520	0.000000	
SECOND_OF_PAIR	390410782	390410782	1.000000	0	389498091	0.997662	57671457072	363631154	54202063929	53183223497	0.000000	0.004352	0.003595	0.000241	150.000000	389438602	0.999847	0	0.500913	0.006623	0.000000	
PAIR	780821564	780821564	1.000000	0	779808172	0.998702	115646889639	730185635	108852772099	106964645641	0.000000	0.004160	0.003447	0.000238	150.000000	778877204	0.998806	0	0.500763	0.006571	0.000000