#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01950/HG01950.cram --algo AlignmentStat 1000G/HG01950/QCmetrics/HG01950.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	341185796	341185796	1.000000	0	341126748	0.999827	50721157859	321234907	47938582584	47341681618	0.000000	0.003570	0.002924	0.000243	150.000000	340140086	0.997108	0	0.500443	0.007298	0.000000	
SECOND_OF_PAIR	341185796	341185796	1.000000	0	340175809	0.997040	50313092641	318155560	47393758195	46461693990	0.000000	0.004531	0.003794	0.000248	150.000000	340140086	0.999895	0	0.501263	0.007543	0.000000	
PAIR	682371592	682371592	1.000000	0	681302557	0.998433	101034250500	639390467	95332340779	93803375608	0.000000	0.004048	0.003357	0.000245	150.000000	680280172	0.998499	0	0.500853	0.007420	0.000000