#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01951/HG01951.cram --algo AlignmentStat 1000G/HG01951/QCmetrics/HG01951.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	347116717	347116717	1.000000	0	347036317	0.999768	51597245849	327738686	48902916191	48185628865	0.000000	0.003645	0.003087	0.000235	150.000000	346129418	0.997387	0	0.500484	0.006077	0.000000	
SECOND_OF_PAIR	347116717	347116717	1.000000	0	346172389	0.997280	51229014817	324947448	48413414746	47436474076	0.000000	0.004366	0.003730	0.000240	150.000000	346129418	0.999876	0	0.500933	0.006281	0.000000	
PAIR	694233434	694233434	1.000000	0	693208706	0.998524	102826260666	652686134	97316330937	95622102941	0.000000	0.004004	0.003407	0.000237	150.000000	692258836	0.998630	0	0.500708	0.006179	0.000000