#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01954/HG01954.cram --algo AlignmentStat 1000G/HG01954/QCmetrics/HG01954.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	356727818	356727818	1.000000	0	356670244	0.999839	53052358567	335893967	50132424202	49561148566	0.000000	0.003243	0.002684	0.000235	150.000000	355804941	0.997574	0	0.500566	0.006329	0.000000	
SECOND_OF_PAIR	356727818	356727818	1.000000	0	355842001	0.997517	52683139515	332806911	49606597191	48691928087	0.000000	0.004174	0.003512	0.000240	150.000000	355804941	0.999896	0	0.501372	0.006529	0.000000	
PAIR	713455636	713455636	1.000000	0	712512245	0.998678	105735498082	668700878	99739021393	98253076653	0.000000	0.003707	0.003096	0.000238	150.000000	711609882	0.998734	0	0.500968	0.006429	0.000000