#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01956/HG01956.cram --algo AlignmentStat 1000G/HG01956/QCmetrics/HG01956.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382226063	382226063	1.000000	0	382082165	0.999624	56735148512	360914698	53806313158	52958076253	0.000000	0.004094	0.003471	0.000264	150.000000	381139155	0.997532	0	0.500529	0.007045	0.000000	
SECOND_OF_PAIR	382226063	382226063	1.000000	0	381205890	0.997331	56403496848	357640014	53307333521	52333898756	0.000000	0.004447	0.003727	0.000271	150.000000	381139155	0.999825	0	0.501292	0.007152	0.000000	
PAIR	764452126	764452126	1.000000	0	763288055	0.998477	113138645360	718554712	107113646679	105291975009	0.000000	0.004270	0.003598	0.000267	150.000000	762278310	0.998677	0	0.500910	0.007099	0.000000