#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01967/HG01967.cram --algo AlignmentStat 1000G/HG01967/QCmetrics/HG01967.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	343695247	343695247	1.000000	0	343612249	0.999759	51126623097	324926507	48500722988	47882346887	0.000000	0.003347	0.002822	0.000229	150.000000	342576110	0.996985	0	0.500405	0.006313	0.000000	
SECOND_OF_PAIR	343695247	343695247	1.000000	0	342617394	0.996864	50685600147	321338969	47890579101	47023619308	0.000000	0.004107	0.003478	0.000236	150.000000	342576110	0.999880	0	0.501399	0.006509	0.000000	
PAIR	687390494	687390494	1.000000	0	686229643	0.998311	101812223244	646265476	96391302089	94905966195	0.000000	0.003725	0.003148	0.000233	150.000000	685152220	0.998430	0	0.500901	0.006411	0.000000