#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01970/HG01970.cram --algo AlignmentStat 1000G/HG01970/QCmetrics/HG01970.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	359117543	359117543	1.000000	0	359021280	0.999732	53296942254	336234958	50127519267	49321338537	0.000000	0.004049	0.003331	0.000240	150.000000	358172630	0.997636	0	0.500509	0.006504	0.000000	
SECOND_OF_PAIR	359117543	359117543	1.000000	0	358229826	0.997528	52993796246	333216872	49674576606	48827245754	0.000000	0.004222	0.003414	0.000247	150.000000	358172630	0.999840	0	0.501058	0.006585	0.000000	
PAIR	718235086	718235086	1.000000	0	717251106	0.998630	106290738500	669451830	99802095873	98148584291	0.000000	0.004135	0.003372	0.000244	150.000000	716345260	0.998737	0	0.500783	0.006545	0.000000