#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01979/HG01979.cram --algo AlignmentStat 1000G/HG01979/QCmetrics/HG01979.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	390399848	390399848	1.000000	0	390295456	0.999733	57967935590	367448046	54784625165	53891485170	0.000000	0.003940	0.003312	0.000234	150.000000	389346876	0.997570	0	0.500469	0.006232	0.000000	
SECOND_OF_PAIR	390399848	390399848	1.000000	0	389406855	0.997456	57643905116	364411990	54314102190	53217949181	0.000000	0.004466	0.003745	0.000240	150.000000	389346876	0.999846	0	0.501184	0.006315	0.000000	
PAIR	780799696	780799696	1.000000	0	779702311	0.998595	115611840706	731860036	109098727355	107109434351	0.000000	0.004202	0.003528	0.000237	150.000000	778693752	0.998706	0	0.500826	0.006274	0.000000