#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01980/HG01980.cram --algo AlignmentStat 1000G/HG01980/QCmetrics/HG01980.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	335527704	335527704	1.000000	0	335471802	0.999833	49904670186	317526887	47388422431	46791304191	0.000000	0.003344	0.002826	0.000233	150.000000	334647387	0.997543	0	0.500463	0.006196	0.000000	
SECOND_OF_PAIR	335527704	335527704	1.000000	0	334682510	0.997481	49559889761	314810295	46918978556	46114894697	0.000000	0.003991	0.003393	0.000238	150.000000	334647387	0.999895	0	0.500948	0.006350	0.000000	
PAIR	671055408	671055408	1.000000	0	670154312	0.998657	99464559947	632337182	94307400987	92906198888	0.000000	0.003667	0.003108	0.000235	150.000000	669294774	0.998717	0	0.500705	0.006273	0.000000