#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01992/HG01992.cram --algo AlignmentStat 1000G/HG01992/QCmetrics/HG01992.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	340817857	340817857	1.000000	0	340753587	0.999811	50705077458	321453587	47983837495	47375675143	0.000000	0.003321	0.002794	0.000229	150.000000	339877082	0.997428	0	0.500494	0.005968	0.000000	
SECOND_OF_PAIR	340817857	340817857	1.000000	0	339914290	0.997349	50319223567	318458162	47465022224	46635866297	0.000000	0.004006	0.003391	0.000234	150.000000	339877082	0.999891	0	0.500931	0.006116	0.000000	
PAIR	681635714	681635714	1.000000	0	680667877	0.998580	101024301025	639911749	95448859719	94011541440	0.000000	0.003662	0.003091	0.000231	150.000000	679754164	0.998658	0	0.500712	0.006042	0.000000