#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02006/HG02006.cram --algo AlignmentStat 1000G/HG02006/QCmetrics/HG02006.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	388330457	388330457	1.000000	0	388212309	0.999696	57727887479	366805448	54752278563	54067388657	0.000000	0.003565	0.002999	0.000242	150.000000	387154773	0.997276	0	0.500594	0.006084	0.000000	
SECOND_OF_PAIR	388330457	388330457	1.000000	0	387205802	0.997104	57244184636	362699070	54062272155	53171838094	0.000000	0.004143	0.003458	0.000248	150.000000	387154773	0.999868	0	0.501357	0.006245	0.000000	
PAIR	776660914	776660914	1.000000	0	775418111	0.998400	114972072115	729504518	108814550718	107239226751	0.000000	0.003853	0.003227	0.000245	150.000000	774309546	0.998570	0	0.500975	0.006164	0.000000