#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02009/HG02009.cram --algo AlignmentStat 1000G/HG02009/QCmetrics/HG02009.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	333843426	333843426	1.000000	0	333783125	0.999819	49603842514	312850433	46677206328	46083404966	0.000000	0.003680	0.003009	0.000264	150.000000	332898724	0.997350	0	0.500365	0.007218	0.000000	
SECOND_OF_PAIR	333843426	333843426	1.000000	0	332936174	0.997282	49224330055	309824553	46159172506	45366655924	0.000000	0.004313	0.003550	0.000270	150.000000	332898724	0.999888	0	0.501060	0.007454	0.000000	
PAIR	667686852	667686852	1.000000	0	666719299	0.998551	98828172569	622674986	92836378834	91450060890	0.000000	0.003995	0.003278	0.000267	150.000000	665797448	0.998617	0	0.500712	0.007336	0.000000